Bacterial transcription start site annotation from dRNA-seq data
A RESTful web service and standalone application for automated de-novo annotation of bacterial transcription start sites from dRNA-seq data
Exploring the Lower Part of Discrete Polymer Model Energy Landscapes
In this paper, we introduce a novel approach to exploring the energy landscapes of discrete polymer models, with a particular emphasis on the lower-energy regions that play a critical role in understanding biopolymer folding behavior
Barrier Trees of Degenerate Landscapes
This method paper introduces the concept of barrier trees, a convenient approach to describe the landscape of an optimization function. Barrier trees represent the toplogical characteristics of an energy landscape, such as a unique partitioning into local minima as leaves of the tree and saddle points as internal nodes connecting different minima.
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