Topic

Flavivirus RNA structures

More posts on Flavivirus RNA structures; the introduction is on the first page.

All3DAIalphavirusbacteriaco-transcriptional RNA foldingenergy landscapesflavivirusmolecular epidemiologynew methodNGSnon-coding RNAOne HealthRNA designRNA folding kineticsRNA-protein interactionRNA-RNA interactionRNA structure conservationRNA structure predictionSHAPEsynthetic biologytoolsViennaRNAvirus bioinformaticsxrRNA
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Mon 14 September 2020
Publications

Insect-specific flaviviruses from Zambia and their exoribonuclease-resistant RNAs

This study isolates two insect-specific flaviviruses from mosquitoes in Zambia and shows that their 3'UTRs contain functional xrRNA-like elements that stall Xrn1.

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Mon 06 May 2019
Publications

Musashi binding elements in Zika virus 3'UTR

A comparative analysis of Musashi binding element accessibility in Zika virus and related flavivirus 3' UTRs using thermodynamic RNA structure modeling.

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Mon 25 March 2019
Publications

Comparative genomics of flavivirus 3' UTR RNA structures

A comparative genomics analysis of flavivirus 3' UTRs that identifies conserved exoribonuclease-resistant RNAs and lineage-specific architectural variation across tick-borne, insect-specific, and no-known-vector flaviviruses.

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