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RNA folding kinetics

Posts tagged “RNA folding kinetics”.

All3DAIalphavirusbacteriaco-transcriptional RNA foldingenergy landscapesflavivirusmolecular epidemiologynew methodNGSnon-coding RNAOne HealthRNA designRNA folding kineticsRNA-protein interactionRNA-RNA interactionRNA structure conservationRNA structure predictionSHAPEsynthetic biologytoolsViennaRNAvirus bioinformaticsxrRNA
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Thu 01 July 2010
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BarMap and RNA folding on dynamic energy landscapes

BarMap models RNA folding on changing energy landscapes by linking macrostates between landscape snapshots, enabling efficient analysis of co-transcriptional and externally perturbed folding scenarios.

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Sun 01 June 2008
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Folding kinetics of large RNAs

Kinwalker predicts folding trajectories of large RNAs by combining locally optimal substructures and kinetic heuristics, making co-transcriptional folding analysis feasible for molecules up to about 1500 nucleotides.

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Wed 14 April 2004
Publications

Efficient computation of RNA folding dynamics

This paper shows how barrier trees and numerical integration can approximate RNA folding dynamics efficiently enough to analyze bistable molecules and RNA switches on biologically relevant timescales.

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