TagViennaRNAPosts tagged “ViennaRNA”.All3DAIalphavirusbacteriaco-transcriptional RNA foldingenergy landscapesflavivirusmolecular epidemiologynew methodNGSnon-coding RNAOne HealthRNA designRNA folding kineticsRNA-protein interactionRNA-RNA interactionRNA structure conservationRNA structure predictionSHAPEsynthetic biologytoolsViennaRNAvirus bioinformaticsxrRNAAll posts Wed 02 September 2015Publications SHAPE-directed RNA folding with ViennaRNA: reactivities as soft constraintsThis paper shows how SHAPE-guided RNA folding is implemented in the ViennaRNA Package, comparing three widely used strategies for turning nucleotide reactivities into soft constraints that improve thermodynamic... Read → ← NewerPage 2 / 2