virus bioinformatics
Posts tagged “virus bioinformatics”.
Chikungunya virus phylogeny and lineage-specific RNA structures
An updated CHIKV phylogeny based on 598 genomes, linking lineage structure to conserved and lineage-specific 3' UTR RNA architectures.
Musashi binding elements in Zika virus 3'UTR
A comparative analysis of Musashi binding element accessibility in Zika virus and related flavivirus 3' UTRs using thermodynamic RNA structure modeling.
Comparative genomics of flavivirus 3' UTR RNA structures
A comparative genomics analysis of flavivirus 3' UTRs that identifies conserved exoribonuclease-resistant RNAs and lineage-specific architectural variation across tick-borne, insect-specific, and no-known-vector flaviviruses.
Why bats and humans respond differently to filovirus infection
This paper compares Ebola and Marburg virus infection in bat and human cells and shows that the transcriptional response, pathway activation, and replication dynamics differ substantially between the natural host and...