Co-transcriptional riboswitch modleing with ViennaRNA
Using the 2'dG riboswitch as an example this study explains how co-transcriptional folding under kinetic control can be efficiently modeled with ViennaRNA tools
Showing only posts tagged energy landscapes. Show all posts.
In silico design of ligand triggered RNA switches
A step-by-step guide to designing ligand-inducible RNA switches
How to efficiently explore the lower portion of RNA energy landscapes
In this study we propose a memory-efficient approach for local flooding of the lower portion of an RNA folding landscape