Bacterial transcription start site annotation from dRNA-seq data

A RESTful web service and standalone application for automated de-novo annotation of bacterial transcription start sites from dRNA-seq data

In silico identification of bacterial transcription start sites (TSS) has been a major challenge for the last years. To address this issue, we have developped TSSAR, a statistical method for analyzing dRNA-seq data, together with colleagues from the Bioinformatics department at the University of Leipzig.


TSSAR: TSS annotation regime for dRNA-seq data
Fabian Amman, Michael T. Wolfinger, Ronny Lorenz, Ivo L. Hofacker, Peter F. Stadler, Sven Findeiß
BMC Bioinformatics 15:89 (2014) | doi: 10.1186/1471-2105-15-89 | PDF

Posted by Michael T. Wolfinger on in publications. updated Tags: NGS, bacteria.