Xinyang flavivirus and a likely tick-only orthoflavivirus clade
Xinyang flavivirus defines a basal, likely tick-only orthoflavivirus clade and expands the comparative picture of vertebrate-independent flavivirus evolution.
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Automated lineage designation from viral genomic data
This study describes an automated framework for lineage designation from phylogenetic and genomic data, designed to scale to very large viral datasets while remaining consistent and interpretable.
RNA structure conservation and molecular epidemiology of TBEV
This study combines comparative RNA structure analysis with molecular epidemiology to characterize conserved and variable 3' UTR architectures across tick-borne encephalitis virus lineages.
Molecular epidemiology and RNA structure in Chikungunya virus
Comparative and phylogenetic analysis of CHIKV genomes links lineage-associated single-nucleotide variants to changes in conserved RNA structures.
Genomic epidemiology of SARS-CoV-2 superspreading events in Austria
This study shows how superspreading events shaped the first wave of SARS-CoV-2 in Austria, based on viral mutations and travel-linked transmission patterns.
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