Xinyang flavivirus is a novel tick-borne Orthoflavivirus
In this paper, we report the discovery of Xinyang flavivirus (XiFV), a novel virus isolated from Haemaphysalis flava ticks in China. Through phylogenetic analysis, we found that XiFV is closely related to other tick-only flaviviruses, such as Mpulungu flavivirus (MPFV) from Zambia and Ngoye virus (NGOV) from Senegal. This positions XiFV in a unique clade of orthoflaviviruses, a group that seems to infect only ticks, without any known vertebrate host

What sets XiFV apart from many other flaviviruses is its apparent restriction to an arthropod-only life cycle. While most flaviviruses are transmitted between ticks and mammals or birds, XiFV shows no evidence of such transmission. Its genome exhibits traits similar to insect-specific flaviviruses, reinforcing the idea that it might be confined to ticks. Notably, XiFV and its close relatives lack a crucial protein cleavage site found in flaviviruses that infect vertebrates, further suggesting their life cycle is restricted to tick populations.
On a structural level, XiFV shares several characteristics with other orthoflaviviruses, particularly in the formation of complex RNA structures in its 3′ untranslated region. These structures are known to play a role in viral replication and evasion of host immune defenses. Our findings add to the growing understanding that a distinct group of tick-borne flaviviruses might not need a vertebrate host to survive, opening the door to further research into their ecology and interactions with other pathogens.
As this new virus continues to be studied, it highlights the importance of understanding the diverse life cycles and evolutionary pressures shaping tick-borne viruses, which could have broader implications for public health and virology.
Citation
Xinyang flavivirus, from Haemaphysalis flava ticks in Henan province, China, defines a basal, likely tick-only flavivirus clade
Lan-Lan Wang, Qia Cheng, Natalee D. Newton, Michael T. Wolfinger, Mahali S. Morgan, Andrii Slonchak, Alexander A. Khromykh, Tian-Yin Cheng, Rhys H. Parry
J. Gen. Virol. 105(5) (2024) | doi:10.1099/jgv.0.001991 | PDF
See Also
An African Tick Flavivirus Forming an Independent Clade Exhibits Unique Exoribonuclease-Resistant RNA Structures in the Genomic 3’-Untranslated Region
Hayato Harima, Yasuko Orba, Shiho Torii, Yongjin Qiu, Masahiro Kajihara, Yoshiki Eto, Naoya Matsuta, Bernard M. Hang’ombe, Yuki Eshita, Kentaro Uemura, Keita Matsuno, Michihito Sasaki, Kentaro Yoshii, Ryo Nakao, William W. Hall, Ayato Takada, Takashi Abe, Michael T. Wolfinger, Martin Simuunza, Hirofumi Sawa
Sci. Rep. 11:4883 (2021) | doi: 10.1038/s41598-021-84365-9 | PDF