In this paper, we study the molecular epidemiology and RNA structureome diversity of tick-borne encephalitis virus (TBEV). Moreover, we propose a unified picture of pervasive non-coding RNA structure conservation across all known TBEV subtypes
The 3'UTR of Mosquito-Borne Flaviviruses (MBFVs) contain evolutionarily conserved functional elements, such as exoribonuclease-resistant RNAs (xrRNAs), dumbbell elements or terminal stem-loops. In this contribution we describe, annotate, and compare these elements within different serological groups of MBFVs
Here we characterize a pseudoknot in the 5'UTR Internal Ribosome Entry Site (IRES) of Bovine Viral Diarrhea Virus (BVDV) using SHAPE-guided RNA structure probing and computational modelling of secondary and tertiary structures
Discovering the characteristic traits of Musashi Binding Elements (MBEs) in Flaviviruses with a Thermodynamic Model
Telomerase RNAs are intrinsically difficult to find by homology search methods, even within phylogenetically related groups. This study reports our efforts in annotating telomerase RNAs in the Saccharomycetacea subgroup of yeasts, using the ViennaRNA Package and related tools