Mar 02 2015 Building efficient NGS analysis pipelines with ViennaNGS

ViennaNGS is a workflow system for building efficient NGS data analysis pipelines, integrating high-level routines and wrapper functions for common NGS processing tasks

Jun 12 2014 How to efficiently explore the lower portion of RNA energy landscapes

Discrete energy landscapes provide a valuable means for analyzing non-equilibrium properties of biopolymers. In this study we propose a memory-efficient approach for local flooding of the lower portion of an RNA folding landscape

Apr 15 2014 How to compute normalized RNA-seq expression from multicov files

Why you should use TPM rather than RPKM

Apr 13 2014 Bacterial transcription start site annotation from dRNA-seq data

A RESTful web service and standalone application for automated de-novo annotation of bacterial transcription start sites from dRNA-seq data

Apr 14 2006 Exploring the Lower Part of Discrete Polymer Model Energy Landscapes

In this paper, we introduce a novel approach to exploring the energy landscapes of discrete polymer models, with a particular emphasis on the lower-energy regions that play a critical role in understanding biopolymer folding behavior